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Statistical Methods for Environmental Epidemiology with R : A Case Study in Air Pollution and Health
Advances in statistical methodology and computing have played an important role in allowing researchers to more accurately assess the health effects of ambient air pollution. The methods and software developed in this area are applicable to a wide array of problems in environmental epidemiology. This book provides an overview of the methods used for investigating the health effects of air pollution and gives examples and case studies in R which demonstrate the application of those methods to real data. The book will be useful to statisticians, epidemiologists, and graduate students working in the area of air pollution and health and others analyzing similar data.
Sodium Channels, Pain, and Analgesia
Sodium channels confer excitability on neurons in nociceptive pathways and exhibit neuronal tissue specific and injury regulated expression. This volume provides recent insights into the control of expression, functioning and membrane trafficking of nervous system sodium channels and reviews why sodium channel sub-types are potentially important drug targets in the treatment of pain. The roles of sodium channels in dental and visceral pain are also addressed. The emerging role of sodium channel Nav1.3 in neuropathic states is another important theme. The final chapter highlights the functional diversity of sodium channels in part provided by post-transcriptional processing and the insights into sodium channel function that are being provided by tissue specific and inducible gene knock-out technology.
Snake and spider toxins : Methods and protocols
Explores techniques and protocols, across various biological disciplines, used to study snake and spider peptide toxins. The chapters in this book are organized into four parts and cover topics such as the use of toxins in drug development; analysis of bioactivity of complex mixtures like venom; extraction of venom glands and the production of toxins; characterization of toxins from the RNA level to the peptide structure; and the determination of the toxin’s biological function. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Snake and Spider Toxins: Methods and Protocols is a valuable resource for both novice and expert researchers who are interested in learning more about this evolving field.
Skin stem cells : Methods and protocols
Explores techniques in identifying and characterizing various skin stem cells and generating skin-like structures in vitro. The goal of the book is to present exciting advances in skin biology in an effort to provide a better understanding of skin and, eventually, to allow us to regenerate skin with its original form and function. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Skeletal muscle stem cells : Methods and protocols
Looks at the latest technologies and methods--combined with new genetic tools available in animal models--used in this constantly evolving field. The chapters in this book are organized into three sections: Section one covers muscle stem cells and progenitor cells; Section Two discusses animal models for muscle stem cells and regeneration; and Section Three explores bioinformatics and imaging analysis for muscle stem cells. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Single cell analysis : Methods and protocols
Explores the latest advancements and techniques used to study cell analysis, their capabilities, and the type of results that can be obtained. The chapters in this book cover topics such as FACS; fluorescence microscopy; organic spectroscopy such as MALDI; inorganic spectroscopy such as ICP-MS; and sequencing. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Simulation Approaches in Transportation Analysis : Recent Advances and Challenges
Focuses on the latest advanced research on modeling as well as applications of transport simulation, including simulation of vehicle movements on the road, dynamic simulation of traffic flow on transport networks, and simulation of the movement of people in an urban area. Models from the three continents of Europe, North America, and Asia are discussed in detail. Research issues and future directions of transport simulation development are systematically addressed. It is the first book to thoroughly discuss global developments and the broad issues of transport simulation. The book will be useful for researchers and graduate students to understand the application of simulation in transport analysis and future research needs. Practitioners will find the book useful for practical issues such as the applicability of simulation methods, their reproducibility, and output interpretation.
SH2 domains: Functional modules and evolving tools in biology
Looks at the latest methods used to study and modulate the biological function and mechanisms of SH2 domains. The chapters in this book are organized into five parts. Part One presents methodology aimed at determining the structures and dynamics of SH2 domains and their complexes with phosphopeptides. Part Two discusses techniques to understand and predict interactions of SH2 domains by measuring or calculating their affinity to phosphopeptides. Part Three focuses on inhibitors of SH2 domains that lead the way for chemical tool development and drug discovery. Part Four describes how to evolve and engineer SH2 domains with specific binding properties, and Part Five explores how to measure the regulation of protein tyrosine phosphatase activity through allosteric binding of peptides to SH2 domains and condensation. Chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, SH2 Domains: Functional Modules and Evolving Tools in Biology is a valuable resource for researchers, working in the biophysical and biochemical field, who want to learn more about this exciting and versatile class of regulatory and signaling domains.
Selective autophagy : Methods and protocols
Presents the latest techniques used by researchers to study selective autophagy in a broad range of organisms such as yeast, plants, worms, fruit flies, and mammals. The chapters in this book cover several types of selective autophagy such as mitophagy, aggrephagy, ER-phagy, ferritinophagy, pexophagy, and nucleophagy. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Robustness and Usability in Modern Design Flows
The size of technically producible integrated circuits increases continuously. But the ability to design and verify these circuits does not keep up with this development. Therefore today’s design flow has to be improved to achieve a higher productivity. In Robustness and Usability in Modern Design Flows the current design methodology and verification methodology are analyzed, a number of deficiencies are identified and solutions suggested. Improvements in the methodology as well as in the underlying algorithms are proposed.An in-depth presentation of preliminary concepts makes the book self-contained. Based on this foundation major design problems are targeted. In particular, a complete tool flow for Synthesis for Testability of SystemC descriptions is presented. The resulting circuits are completely testable and test pattern generation in polynomial time is possible.
RNA-Protein Interaction Protocols
Due to the vital biological importance of RNA and proteins functioning together within a cell, a protocol volume describing experimental procedures to study their interactions should find a home in many laboratories. RNA-Protein Interaction Protocols, Second Edition updates, complements, and expands upon the popular first edition by providing a collection of cutting-edge techniques developed or refined in the past few years along with tried-and-true methods. The expert contributors explore the isolation and characterization of RNA-protein complexes, the analysis and measurement of RNA-protein interaction, and related novel techniques and strategies. Written in the highly successful Methods in Molecular Biology™ series format, the chapters include brief introductions to the material, lists of necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and a Notes section which highlights tips on troubleshooting and avoiding known pitfalls.
RNA vaccines : Methods and protocols
Expands on the previous edition with discussions of the latest technology and advancements in the development of RNA vaccines and proposed solutions on how to tackle currently unmet medical needs. The chapters in this book are organized into four parts and cover topics such as replication and non-replicating RNA vectors, formulation and delivery of RNA vaccines, and clinical and nonclinical development of RNA vaccines. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
RNA analysis : Methods and protocols
Explores the latest technologies for RNA analysis, covering fundamental techniques and innovative approaches that expand our understanding of RNA biology. The chapters in this book are organized into four parts: reverse transcription and RNA capture methods; high-throughput sequencing methods; RNA maturation: splicing, polyadenylation, and epitranscriptomic modifications; and RNA surveillance: nonsense-mediated mRNA decay. These chapters aim to provide detailed protocols for select techniques used by molecular and computational biologists to isolate, amplify, detect, modify, and analyze RNA to gain insight into a wide range of cellular functions. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Rheumatoid arthritis : Methods and protocols
Explores standard laboratory protocols and methodology commonly used in basic and translational studies in the field of rheumatoid arthritis (RA) treatment. Chapters detail including basic RA models, evaluation of disease activity and immunological status, systemic drug delivery, and new research tools. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.
Proteases and cancer : Methods and protocols
Details bioinformatics analysis, biochemical assays, recombinant protein expression and purification, methods to investigate protease activity in cell-based, organoids and in vivo systems, proteomics, transcriptomics, machine learning and novel approaches to target dysregulated protease activity in cancer. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Potassium channels : Methods and protocols
Explores the widespread involvement of K+ channels in cellular processes, which makes these membrane proteins intriguing targets for both fundamental scientific inquiry and the development of pharmaceutical compounds. The chapters in this book provide an in-depth look at various techniques and the latest protocols commonly used in ion channel research to investigate K+ channel structures, functions, and their interactions with drugs. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Physical (A)Causality : Determinism, Randomness and Uncaused Events
Addresses the physical phenomenon of events that seem to occur spontaneously and without any known cause. These are to be contrasted with events that happen in a predetermined, predictable, lawful, and causal way. The book tries to answer some of these questions by introducing intrinsic, embedded observers and provable unknowns; that is, observables and procedures which are certified (relative to the assumptions) to be unknowable or undoable. A (somewhat iconoclastic) review of quantum mechanics is presented which is inspired by quantum logic. Postulated quantum (un-)knowables are reviewed. More exotic unknowns originate in the assumption of classical continua, and in finite automata and generalized urn models, which mimic complementarity and yet maintain value definiteness. Traditional conceptions of free will, miracles and dualistic interfaces are based on gaps in an otherwise deterministic universe.
Peptidomics : Methods and strategies
Explores essential techniques and newly emerged applications used in the expanding field of peptidomics. The opening chapters describe sample preparation and basic techniques. Subsequent chapters delve into quantitative peptidomics, bioinformatics, deep learning approaches, non-human model organisms, and peptide toxins. The last section includes multiple chapters on applications of peptidomics for human clinical specimens. Written for the highly successful Methods in Molecular Biology series, chapters include overviews and introductions to their respective topics, lists of the necessary materials, reagents, and instrumentation, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Peptide antibodies : Methods and protocols
Explores current methods for the production and use of peptide antibodies. The book delves into various aspects of peptide synthesis and analysis, peptide-carrier conjugation, epitope and paratope prediction and identification, as well as improved assays and other uses of peptide antibodies. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective chapters, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Partial Covers, Reducts and Decision Rules in Rough Sets : Theory and Applications
Devoted to theoretical and experimental study of partial reducts and partial decision rules on the basis of the study of partial covers. The use of partial (approximate) reducts and decision rules instead of exact ones allows us to obtain more compact description of knowledge contained in decision tables, and to design more precise classifiers. Algorithms for construction of partial reducts and partial decision rules, bounds on minimal complexity of partial reducts and decision rules, and algorithms for construction of the set of all partial reducts and the set of all irreducible partial decision rules are considered. The book includes a discussion on the results of numerous experiments with randomly generated and real-life decision tables. These results show that partial reducts and decision rules can be used in data mining and knowledge discovery both for knowledge representation and for prediction.
