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DNA Methylation : Basic Mechanisms
The structural and functional importance of the correct patterns of DNA methylation in all parts of a mammalian genome is not well understood. The stability, inheritability, and developmental flexibility of these patterns point to a major role that these patterns appear to play in determining structure and function of the genome.
DNA manipulation and analysis
Details technologies on recombinant DNA and nucleic acid manipulation that underpin much of the biological sciences and instructions on how to conduct them successfully. Chapters guide the reader through the basics of oligonucleotide synthesis and DNA sequencing; recombinant DNA plasmid work; cell-free experiments and the latest developments in CRISPR approaches to genome modification.
DNA damage detection : Methods and protocols
Explores techniques in DNA damage analysis, important not only for understanding cellular health after exposure to genotoxic agents but also for assessing cellular ability of genome maintenance. The book explores traditional DNA damage measurement methods, as well as modern fluorescence-based analysis and high throughput automatic analysis methods. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
DNA Conformation and Transcription
the first book that compiles the fruits of the studies that have been performed to date to solve the riddle ‘written’ in DNA conformation ("conformation code"). This book provides a comprehensive overview of the field by covering history of the field, up-to-date topics, clarifications of present day research, and future perspective of what is still to be discovered. Thus, it serves as an invaluable source of information on the "conformation code".
DNA Computing Models
This book emphasizes computational methods to tackle central problems of DNA computing, such as controlling living cells, building patterns, and generating nanomachines.
DNA Computing ; Vol. 4287 ; 12th International Meeting on DNA Computing, DNA12, Seoul, Korea, June 5-9, 2006, Revised Selected Papers
This book constitutes the thoroughly refereed postproceedings of the 12th International Meeting on DNA Computing, DNA12, held in Seoul, Korea in June 2006. The 34 revised full papers presented are organized in topical sections on molecular and membrane computing models, complexity analysis, sequence and tile designs and their properties, DNA tile self-assembly models, simulator and software for DNA computing, DNA computing algorithms and new applications, novel experimental approaches, and experimental solutions.
DNA Computing ; Vol. 3892 ; 11th International Workshop on DNA Computing, DNA11, London, ON, Canada, June 6-9, 2005. Revised Selected Papers.
It is evidence of how well the interdisciplinary nature of the conference has truly matured that the major criterion of quality, agreed upon in advance by the Program Committee (PC), produced a nearly balanced program as well across the two major categories, full papers and talks with an abstract only.
DNA computing ; Vol. 3384 10th International workshop on DNA computing, DNA10, Milan, Italy, June 7-10, 2004, Revised Selected Papers
This book constitutes the thoroughly refereed postproceedings of the 10th International Workshop on DNA Based Computers, DNA10, held in Milano, Italy in June 2004. The 39 revised full papers presented were carefully selected during two rounds of reviewing and improvement from an initial total of 94 submissions. The papers address all current issues in DNA based computing and biomolecular computing ranging from theoretical and methodological issues to implementations and experimental aspects.
DNA Computing ; 7th International Workshop on DNA-Based Computers, DNA7, Tampa, FL, USA, June 10-13, 2001, Revised Papers
Constitutes the post-proceedings of the 7th International Workshop on DNA-Based Computers, held in Florida in 2001. The 26 papers cover experimental tools, theoretical tools, probabilistic computational models, computer simulation and sequence design, algorithms, experimental solutions and more.
DNA Computing ; 13th International Meeting on DNA Computing, DNA13, Memphis, TN, USA, June 4-8, 2007, Revised Selected Papers
This book constitutes the thoroughly refereed postproceedings of the 13th International Meeting on DNA Computing, DNA 13, held in Memphis, TN, USA, June 4-8, 2007.
DNA Binders and Related Subjects
advances in technology and the application of new methods to outstanding problems have played a major part in the development of ideas about drug-nucleic acid recognition. The field has undergone an explosive diversification as wider and wider problems became accessible to study using the new ideas and techniques. This volume reflects that diversification by offering accounts of selected areas that illustrate recent advances in the study of ligand–nucleic acid binding over disparate areas of the subject. There are chapters dealing specifically with the invention and application of new methodology, and a particularly thoughtful essay on the interpretation of X-ray diffraction data which may not be as straightforward as is often imagined. Other chapters illustrate the diversity and complexity of drug-DNA binding from several perspectives, referring to particular groups of related compounds or the potential attractions of the less-preferred DNA major groove as a target for nucleotide sequence recognition by ligands.
DNA barcoding : Methods and protocols
Covers the latest advancements and methods used to study DNA barcoding. The chapters in this book are organized into six parts: theory, DNA manipulation, specialized barcoding methods, analysis of DNA barcodes, completing a successful DNA barcode project, and barcoding as citizen science. Part One looks at several theoretical issues in DNA barcoding concerned with DNA barcodes that can and should be used. Part Two discusses protocols for processing samples into DNA barcodes, including DNA isolation, sequencing and managing samples, and the resulting DNA barcodes. Part Three explores the next generation of DNA barcoding such as FRET-based detection, dual nanopore detection, skimming, and closed-tube methods. Part Four addresses programs and websites that handle DNA barcoding data, and includes character-based approaches, barcode gap methods, integrated approaches, and Barcode of Life Database
DNA- and RNA-Based Computing Systems
DNA- and RNA-Based Computing Systems delivers an authoritative overview of DNA- and RNA-based biocomputing systems that touches on cutting-edge advancements in computer science, biotechnology, nanotechnology, and materials science.
DNA and RNA origami : methods and protocols
Detials diverse methodological approaches on the assembly and applications of DNA origami assemblies. Chapters guide readers through different synthetic and computational methods, isolation and structural characterization of 2D and 3D DNA origami nanoarchitectures, nanophotonics, drug delivery, biophysics, and synthetic biology.Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls.
Dissecting the Molecular Anatomy of Tissue
The book provides an updated overview of molecular analysis of human tissues, and the impact this analysis has on diagnosis and prognosis of human diseases. Special emphasis is placed on human cancer and the future directions of the field. Methods of handling clinical tissue samples, including the impact of handling on subsequent molecular analysis, are also discussed. In addition, detailed protocols for molecular analysis of DNA, RNA and protein, with special emphasis on molecular analysis of highly complex human tissue samples containing mixtures of cell populations, are provided.
Discovering Biomolecular Mechanisms with Computational Biology
In this anthology, leading researchers present critical reviews of methods and high-impact applications in computational biology that lead to results that also non-bioinformaticians must know to design efficient experimental research plans. Discovering Biomolecular Mechanisms with Computational Biology also summarizes non-trivial theoretical predictions for regulatory and metabolic networks that have received experimental confirmation. Discovering Biomolecular Mechanisms with Computational Biology is essential reading for life science researchers and higher-level students that work on biomolecular mechanisms and wish to understand the impact of computational biology for their success.
Developments in language theory ; Vol. 3572 ; 9th International Conference, DLT 2005, Palermo, Italy, July 4-8, 2005, Proceedings
Constitutes the refereed proceedings of the 9th International Conference on Developments in Language Theory, DLT 2005, held in Palermo, Italy in July 2005. Several issues in language theory are addressed including grammars, acceptors, and transducers for strings frees, graphs, and arrays; efficient text algorithms; and more.
Developments in language theory ; 8th International Conference, DLT 2004, Auckland, New Zealand, December 13-17, Proceedings
Basic Notions of Reaction Systems / A Kleene Theorem for a Class of Communicating Automata with Effective Algorithms / Algebraic and Topological Models for DNA Recombinant Processes / Contributed Papers : Regular Expressions for Two-Dimensional Languages Over One-Letter Alphabet / On Competence in CD Grammar Systems / The Dot-Depth and the Polynomial Hierarchy Correspond on the Delta Levels, and other
Developments in Language Theory ; 12th International Conference, DLT 2008, Kyoto, Japan, September 16-19, 2008. Proceedings
This book constitutes the refereed proceedings of the 12th International Conference on Developments in Language Theory, DLT 2008, held in Kyoto, Japan, September 2008.
Database systems for advanced applications ; Vol. 3453 ; 10th international conference, DASFAA 2005, Beijing, China, April 17-20, 2005, Proceedings
Data Stream Mining and Resource Adaptive Computation.- Purpose Based Access Control for Privacy Protection in Database Systems.- Complex Networks and Network Data Mining.- Bioinformatics.- Indexing DNA Sequences Using q-Grams.- PADS: Protein Structure Alignment Using Directional Shape Signatures.- LinkageTracker: A Discriminative Pattern Tracking Approach to Linkage Disequilibrium Mapping.- Watermarking and Encryption.- Query Optimization in Encrypted Database Systems.- Watermarking Spatial Trajectory Database.- Effective Approaches for Watermarking XML Data.- XML Query Processing.- A Unifying Framework for Merging and Evaluating XML Information.- Efficient Evaluation of Partial Match Queries for XML Documents Using Information Retrieval Techniques.- PathStack: A Holistic Path Join Algorithm for Path Query with Not-Predicates on XML Data.- XML Coding and Metadata Management.- An Improved Prefix Labeling Scheme: A Binary String Approach for Dynamic Ordered XML.- Efficiently Coding and Indexing XML Document.- XQuery-Based TV-Anytime Metadata Management.- Data Mining.- Effective Database Transformation and Efficient Support Computation for Mining Sequential Patterns.
