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Membrane Computing; 8th International Workshop, WMC 2007 Thessaloniki, Greece, June 25-28, 2007 Revised Selected and Invited Papers
This volume contains a selection of papers presented at the Eighth Workshop on Membrane Computing, WMC8, which took place in Thessaloniki, Greece, during June 25–28, 2008. Special attention was paid to the interaction of membrane computing with biology and computer science, focusing on the - ological roots of membrane computing, on applications of membrane computing in biology and medicine, and on possible electronically based implementations.
Membrane Computing ; Vol. 4361 ; 7th International Workshop, WMC 2006, Leiden, Netherlands, July 17-21, 2006, Revised, Selected, and Invited Papers
The present volume contains a selection of papers presented at the Seventh Workshop on Membrane Computing, WMC7, which took place in Leiden, The Netherlands, during July 17–21, 2006. The ?rst three workshops on membrane computing were organized in Curtea de Arge¸ s, Romania – they took place in August 2000 (with the proceedings published in Lecture Notes in Computer Science, volume2235),in August 2001(with a selection of papers published asa special issue of Fundamenta Informaticae, volume 49, numbers 1–3, 2002), and in August 2002 (with the proceedings published in Lecture Notes in Computer Science, volume 2597). The next three workshops were organized in Tarragona, Spain, in July 2003, in Milan, Italy, in June 2004, and in Vienna, Austria, in July 2005, with the proceedings published as volumes 2933, 3365, and 3850, respectively, of Lecture Notes in Computer Science. The 2006edition of WMC wasorganized(and supported) byLorentzCenter, Leiden, under the auspices of the European Molecular Computing Consortium (EMCC). Special attention was paid to the interaction of membrane computing with biology, focusing both on the biological roots of membrane computing and on applications of membrane computing in biology and medicine.
Membrane Computing ; Vol. 3850 ; 6th International Workshop, WMC 2005, Vienna, Austria, July 18-21, 2005, Revised Selected and Invited Papers
The papers in this volume cover all the main directions of research in membrane computing, ranging from theoretical topics in mathematics and computer science, to application issues, especially in biology. More specifically, these papers present research on topics such as: computational power and complexity classes, new types of P systems, relationships to Petri nets, quantum computing, and brane calculi, determinism vs. nondeterminism, hierarchies, the size of small families, algebraic approaches, and designing polynomial solutions to NP-complete problems through the use of membrane systems. Like the previous workshops,
Intramembrane-Cleaving Proteases (I-CLiPs)
The aim of this book is to provide an update on this emerging group of unusual but important proteases for both the specialist and those with a broader interest in proteases. Amongst the target audience will be protease researchers, enzymologists, those working in academia and the pharmaceutical industry on biological processes and diseases involving I-CLiPs.
Interfacial Nanochemistry : Molecular Science and Engineering at Liquid-Liquid Interfaces
The presence of liquid-liquid interface means that real liquids are far from ideal liquids that must be miscible with any kinds of liquids and have no interface. Thus it can be said that the non-ideality of liquids might generate the liquid-liquid interface indeed and that biological systems might be generated from the non-ideal interface. The liquid-liquid interface has been, therefore, studied as a model of biological membrane. From pairing two-phases of gas, liquid and solid, nine different pairs can be obtained, which include three homo-pairs of gas-gas, liquid-liquid and solid-solid pairs. The gas-gas interface, however, is practically no use under the ordinary conditions. Among the interfaces produced by the pairing, the liquid-liquid interface is most slippery and difficult to be studied experimentally in comparison with the gas-liquid and solid-liquid interfaces, as the liquid-liquid interface is flexible, thin and buried between bulk liquid phases. Therefore, in order to study the liquid-liquid interface, the invention of innovative measurement methods has a primary importance.
Computer simulations in condensed matter : From materials to chemical biology ; Vol.2
This extensive and comprehensive collection of lectures by world-leading experts in the field introduces and reviews all relevant computer simulation methods and their applications in condensed matter systems. Volume 1, published as LNP 703 (ISBN 3-540-35270-8) is an in-depth introduction to a vast spectrum of computational techniques for statistical mechanical systems of condensed matter. It will enable the graduate student and both the specialist and nonspecialist researcher to get acquainted with the tools necessary to carry out numerical simulations at an advanced level. The present volume is a state-of-the-art survey on numerical experiments carried out for a great number of systems, ranging from materials sciences to chemical biology, such as supercooled liquids, spin glasses, colloids, polymers, liquid crystals, biological membranes and folding proteins.
Biological Membrane Ion Channels : Dynamics, Structure, and Applications
Ion channels are biological nanotubes that are formed by membrane proteins. Because ion channels regulate all electrical activities in living cells, understanding their mechanisms at a molecular level is a fundamental problem in biology. This book deals with recent breakthroughs in ion-channel research that have been brought about by the combined effort of experimental biophysicists and computational physicists, who together are beginning to unravel the story of these exquisitely designed biomolecules. With chapters by leading experts.
Biochemistry
Biochemistry and the organization of cells -- Water : the solvent for biochemical reactions -- Amino acids and peptides -- The three-dimensional structure of proteins -- Protein purification and characterization techniques -- The behavior of proteins : enzymes -- The behavior of proteins : enzymes, mechanisms, and control -- Lipids and proteins are associated in biological membranes -- Nucleic acids : how structure conveys information -- Biosynthesis of nucleic acids : replication -- Transcription of the genetic code : the biosynthesis of RNA -- Protein synthesis : translation of the genetic message -- Nucleic acid biotechnology techniques -- Viruses, cancer, and immunology -- The importance of energy changes and electron transfer in metabolism -- Carbohydrates -- Glycolysis
