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This work presents a comprehensive treatment of the main results and methods of the theory of Noetherian semigroup algebras. These general results are then applied and illustrated in the context of important classes of algebras that arise in a variety of areas and have been recently intensively studied. Several concrete constructions are described in full detail, in particular intriguing classes of quadratic algebras and algebras related to group rings of polycyclic-by-finite groups. These give new classes of Noetherian algebras of small Gelfand-Kirillov dimension. The focus is on the interplay between their combinatorics and the algebraic structure.