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This manuscript discusses the potentials of the approaches as mentioned below to monitor the AIVs in WMW. Molecular diagnostic platforms enable for accurate detection of the AIVs in the feces of infected birds. Similar technologies can be used to determine the bird species through DNA barcoding, enabling non-invasive research on the epidemiology of the disease. Wild migratory waterfowl (WMW) play significant role in the transmission of avian influenza viruses (AIVs) on large distances. Understanding bird migrations may therefore significantly contribute towards understanding of the disease epidemiology, however most conventional approaches to trace WMW migrations are based on capturing, tagging (mostly ringing or GPS devices) and their re-capturing to link the departure and arrival places.